Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CDC45
wikigenes
PDBj
CellType: HCT 116
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX15855482
GSM6265476: WT1 S25; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CDC45
Cell type
Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma
Attributes by original data submitter
Sample
source_name
Colorectal Cancer
cell type
HCT116 cell line stably expressing WT-ORC1-3xFlag
chip antibody
anti-CDC45
treatment
Untreated
replicate
1
geo_loc_name
missing
collection_date
missing
Sequenced DNA Library
library_name
GSM6265476
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Phenol:chlorophorm Based on Blecher-Gonen et al. 2013
Sequencing Platform
instrument_model
NextSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
23800855
Reads aligned (%)
90.2
Duplicates removed (%)
25.6
Number of peaks
16915 (qval < 1E-05)
hg19
Number of total reads
23800855
Reads aligned (%)
89.7
Duplicates removed (%)
25.7
Number of peaks
16876 (qval < 1E-05)
Base call quality data from
DBCLS SRA