Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CDC45

Cell type

Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Colorectal Cancer
cell type
HCT116 cell line stably expressing WT-ORC1-3xFlag
chip antibody
anti-CDC45
treatment
Untreated
replicate
1
geo_loc_name
missing
collection_date
missing

Sequenced DNA Library

library_name
GSM6265476
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Phenol:chlorophorm Based on Blecher-Gonen et al. 2013

Sequencing Platform

instrument_model
NextSeq 2000

hg38

Number of total reads
23800855
Reads aligned (%)
90.2
Duplicates removed (%)
25.6
Number of peaks
16915 (qval < 1E-05)

hg19

Number of total reads
23800855
Reads aligned (%)
89.7
Duplicates removed (%)
25.7
Number of peaks
16876 (qval < 1E-05)

Base call quality data from DBCLS SRA